Detalhe da pesquisa
1.
Multiple sequence alignment-based RNA language model and its application to structural inference.
Nucleic Acids Res
; 52(1): e3, 2024 Jan 11.
Artigo
em Inglês
| MEDLINE | ID: mdl-37941140
2.
EVLncRNAs 3.0: an updated comprehensive database for manually curated functional long non-coding RNAs validated by low-throughput experiments.
Nucleic Acids Res
; 52(D1): D98-D106, 2024 Jan 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-37953349
3.
Fast and accurate protein intrinsic disorder prediction by using a pretrained language model.
Brief Bioinform
; 24(4)2023 07 20.
Artigo
em Inglês
| MEDLINE | ID: mdl-37204193
4.
EVlncRNA-Dpred: improved prediction of experimentally validated lncRNAs by deep learning.
Brief Bioinform
; 24(1)2023 01 19.
Artigo
em Inglês
| MEDLINE | ID: mdl-36573492
5.
Nucleolar HEAT Repeat Containing 1 Up-regulated by the Mechanistic Target of Rapamycin Complex 1 Signaling Promotes Hepatocellular Carcinoma Growth by Dominating Ribosome Biogenesis and Proteome Homeostasis.
Gastroenterology
; 165(3): 629-646, 2023 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-37247644
6.
Probing RNA structures and functions by solvent accessibility: an overview from experimental and computational perspectives.
Brief Bioinform
; 23(3)2022 05 13.
Artigo
em Inglês
| MEDLINE | ID: mdl-35348613
7.
SPIN-CGNN: Improved fixed backbone protein design with contact map-based graph construction and contact graph neural network.
PLoS Comput Biol
; 19(12): e1011330, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-38060617
8.
RNA tertiary structure modeling with BRiQ potential in CASP15.
Proteins
; 91(12): 1771-1778, 2023 Dec.
Artigo
em Inglês
| MEDLINE | ID: mdl-37638558
9.
SPOT-Contact-LM: improving single-sequence-based prediction of protein contact map using a transformer language model.
Bioinformatics
; 38(7): 1888-1894, 2022 03 28.
Artigo
em Inglês
| MEDLINE | ID: mdl-35104320
10.
Predicting RNA distance-based contact maps by integrated deep learning on physics-inferred secondary structure and evolutionary-derived mutational coupling.
Bioinformatics
; 38(16): 3900-3910, 2022 08 10.
Artigo
em Inglês
| MEDLINE | ID: mdl-35751593
11.
Inhibiting the transcription and replication of Ebola viruses by disrupting the nucleoprotein and VP30 protein interaction with small molecules.
Acta Pharmacol Sin
; 44(7): 1487-1499, 2023 Jul.
Artigo
em Inglês
| MEDLINE | ID: mdl-36759643
12.
Terbinafine prevents colorectal cancer growth by inducing dNTP starvation and reducing immune suppression.
Mol Ther
; 30(10): 3284-3299, 2022 10 05.
Artigo
em Inglês
| MEDLINE | ID: mdl-35765243
13.
DescribePROT: database of amino acid-level protein structure and function predictions.
Nucleic Acids Res
; 49(D1): D298-D308, 2021 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-33119734
14.
EVLncRNAs 2.0: an updated database of manually curated functional long non-coding RNAs validated by low-throughput experiments.
Nucleic Acids Res
; 49(D1): D86-D91, 2021 01 08.
Artigo
em Inglês
| MEDLINE | ID: mdl-33221906
15.
Self-Inhibitory Peptides Targeting the Neisseria gonorrhoeae MtrCDE Efflux Pump Increase Antibiotic Susceptibility.
Antimicrob Agents Chemother
; 66(1): e0154221, 2022 01 18.
Artigo
em Inglês
| MEDLINE | ID: mdl-34633841
16.
De novo protein design by an energy function based on series expansion in distance and orientation dependence.
Bioinformatics
; 38(1): 86-93, 2021 12 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-34406339
17.
SPOT-1D-Single: improving the single-sequence-based prediction of protein secondary structure, backbone angles, solvent accessibility and half-sphere exposures using a large training set and ensembled deep learning.
Bioinformatics
; 37(20): 3464-3472, 2021 Oct 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-33983382
18.
RNAcmap: a fully automatic pipeline for predicting contact maps of RNAs by evolutionary coupling analysis.
Bioinformatics
; 37(20): 3494-3500, 2021 Oct 25.
Artigo
em Inglês
| MEDLINE | ID: mdl-34021744
19.
Improved RNA secondary structure and tertiary base-pairing prediction using evolutionary profile, mutational coupling and two-dimensional transfer learning.
Bioinformatics
; 37(17): 2589-2600, 2021 Sep 09.
Artigo
em Inglês
| MEDLINE | ID: mdl-33704363
20.
Structure-aware protein-protein interaction site prediction using deep graph convolutional network.
Bioinformatics
; 38(1): 125-132, 2021 12 22.
Artigo
em Inglês
| MEDLINE | ID: mdl-34498061